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All participants please evaluate the course!

Go to punkt.ku log on, go into Absalon and find the
course "SCI-B2-0910-Biological Networks". On the
course page you will find a link for the evaluation form.
Since you are the first to participate in the bachelor version
of the course, we would very much like to hear your opinion!
Deadline is: 24. januar 2010 23:55

Examination:

Download the exam questions 2009/2010 here.

Material:

Lectures:

Kim Sneppen, office eb1, phone 353 25352
Monday, Lecture: 13:15-15:00 (Aud M, NBI).
Wednesday, Lecture: 13:15-15:00 (Aud M, NBI).

Plan:

• *Mon 09.11.09: Chapter 1 + Chapter 2 the first 17 pages.
  Problem 1-5 on page 8-9, and problem 1-2 on page 14-15 in the lecture notes.

• *Wed. 11.11.09: Chapter 2 page 17-40.
  Problem 1 on page 17, and problem 1 on page 24 in the lecture notes.

• * Mon 16.11.09: Chapter 2 page 40-53
  Problem 1-2 on page 35, and problem 4 on page 40 in the lecture notes.

• * Wed 18.11.09: Chapter 3 page 1-20 - NB! Lecture from 9:15-11:00 at aud M.
  Download problem here. If you need help then you can download an m file with the solution here.

• * Mon 23.11.09: Chapter 3 page 37-43 (appendix of Chapter 3).
  Download problem here. M file that plots PR and PRM activity as a function of CI: PromoterActivity.m.

• * Wed 25.11.09: Chapter 3 page 20-37.
  We continue with the problem from monday the 23th.

• * Mon 30.11.09: Chapter 5 page 1-13.
  Chapter 3, problem 4 on page 6, and problem 2-4 on page 14 in the lecture notes.
  M files with partial solutions for some of the problems: q4_page6.m, q3_page14.m and q4_page14.m

• * Wed 02.12.09: Chapter 5 page 13-24.
  Download problem here. An m file you can base your own program on is: epigen_skeleton.m.

• * Mon 07.12.09: Chapter 5 page 24-34.
  Chapter 3, problem 4 on page 6, and problem 2-4 on page 14 in the lecture notes.
  We continue with the problem from wednesday the 2th.

• * Wed 09.12.09: Chapter 4 page 1-10.
  Chapter 5, problem 1-2 on page 7.

• * Mon 14.12.09: Chapter 4 page 11-33.
  Download problem here
  Solution files can be downloaded here and here

• * Wed 16.12.09: Chapter 6 page 1-20.
  We continue with the problem from monday the 14th. An extra (fun!) assignment
  for Bo and people who finish early can be downloaded here

• * Mon 11.01.10: Repetition.
  Download problem here
  Solution files: q1ab.m, q1c.m
  and q2abcd.m
  
  Fruit fly protein-protein interaction network mat file: FlyPPI.mat



• * Wed 13.01.10: Repetition.
  

Exercise sessions:

Silja Heilmann, office kb4 phone 353 25273
Monday, Exercises: 15:15-17:00 (NBI computer room above library)
Wednesday, Exercises: 15:15-17:00 (NBI computer room above library)

Cake:

Mon 16.11.09 Kristóf:
Wed 18.11.09: Bo
Mon 23.11.09: Kirstine
Wed 25.11.09: Jacob
Mon 30.11.09: Pia
Wed 02.12.09: Stanislav
Mon 07.12.09: Victor
Wed 09.12.09: Kristian
Mon 14.12.09:
Wed 16.12.09: Kamilla
Mon 11.01.10: Christian
Wed 13.01.10: ANY VOLUNTEERS?